#!/bin/bash
source $HOME/.bashrc
module reset
module load cpu/0.15.4
module load gcc/10.2.0
module load blast-plus/2.11.0

echo "CIPRES_THREADSPP=$CIPRES_THREADSPP"
echo "CIPRES_NP=$CIPRES_NP"
echo "running: blastn $*"

# 1 gigabyte 
# (( maxsize = (1024 * 1024 * 1024) ))

# Maxsize should be 1 so that we never return blast_output.txt but I changed
# it temporarily to 20meg so that Jim can get and check blast_output.txt for debugging
maxsize=1
# maxsize=20971520

blastn $*